Samβada

Samβada is an integrated software for landscape genomic analysis of large datasets. The key features are the study of local adaptation in relationship with environment and the measure of spatial autocorrelation in environmental and molecular datasets.

Releases

Samβada is available on GitHub

https://github.com/Sylvie/sambada

The latest release is

https://github.com/Sylvie/sambada/releases

References

  • Stucki, S., Orozco-terWengel, P., Forester, B. R., Duruz, S., Colli, L., Masembe, C., … Joost, S. (2017). High performance computation of landscape genomic models including local indicators of spatial association. Molecular Ecology Resources, 17(5), 1072–1089. doi:10.1111/1755-0998.12629
  • Stucki, S. (2014) Développement d’outils de géo-calcul haute performance pour l’identification de régions du génome potentiellement soumises à la sélection naturelle: analyse spatiale de la diversité de panels de polymorphismes nucléotidiques à haute densité (800k) chez Bos taurus et B. indicus en Ouganda, EPFL PhD Thesis no 6014, doi:10.5075/epfl-thesis-6014

 

Old version

Samβada 0.5.3

Documentation

Software  

Source code